Prehistoric genomes reveal the genetic foundation and cost of horse domestication.

نویسندگان

  • Mikkel Schubert
  • Hákon Jónsson
  • Dan Chang
  • Clio Der Sarkissian
  • Luca Ermini
  • Aurélien Ginolhac
  • Anders Albrechtsen
  • Isabelle Dupanloup
  • Adrien Foucal
  • Bent Petersen
  • Matteo Fumagalli
  • Maanasa Raghavan
  • Andaine Seguin-Orlando
  • Thorfinn S Korneliussen
  • Amhed M V Velazquez
  • Jesper Stenderup
  • Cindi A Hoover
  • Carl-Johan Rubin
  • Ahmed H Alfarhan
  • Saleh A Alquraishi
  • Khaled A S Al-Rasheid
  • David E MacHugh
  • Ted Kalbfleisch
  • James N MacLeod
  • Edward M Rubin
  • Thomas Sicheritz-Ponten
  • Leif Andersson
  • Michael Hofreiter
  • Tomas Marques-Bonet
  • M Thomas P Gilbert
  • Rasmus Nielsen
  • Laurent Excoffier
  • Eske Willerslev
  • Beth Shapiro
  • Ludovic Orlando
چکیده

The domestication of the horse ∼ 5.5 kya and the emergence of mounted riding, chariotry, and cavalry dramatically transformed human civilization. However, the genetics underlying horse domestication are difficult to reconstruct, given the near extinction of wild horses. We therefore sequenced two ancient horse genomes from Taymyr, Russia (at 7.4- and 24.3-fold coverage), both predating the earliest archeological evidence of domestication. We compared these genomes with genomes of domesticated horses and the wild Przewalski's horse and found genetic structure within Eurasia in the Late Pleistocene, with the ancient population contributing significantly to the genetic variation of domesticated breeds. We furthermore identified a conservative set of 125 potential domestication targets using four complementary scans for genes that have undergone positive selection. One group of genes is involved in muscular and limb development, articular junctions, and the cardiac system, and may represent physiological adaptations to human utilization. A second group consists of genes with cognitive functions, including social behavior, learning capabilities, fear response, and agreeableness, which may have been key for taming horses. We also found that domestication is associated with inbreeding and an excess of deleterious mutations. This genetic load is in line with the "cost of domestication" hypothesis also reported for rice, tomatoes, and dogs, and it is generally attributed to the relaxation of purifying selection resulting from the strong demographic bottlenecks accompanying domestication. Our work demonstrates the power of ancient genomes to reconstruct the complex genetic changes that transformed wild animals into their domesticated forms, and the population context in which this process took place.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Ancient genomic changes associated with domestication of the horse.

The genomic changes underlying both early and late stages of horse domestication remain largely unknown. We examined the genomes of 14 early domestic horses from the Bronze and Iron Ages, dating to between ~4.1 and 2.3 thousand years before present. We find early domestication selection patterns supporting the neural crest hypothesis, which provides a unified developmental origin for common dom...

متن کامل

Mitochondrial genomes from modern horses reveal the major haplogroups that underwent domestication.

Archaeological and genetic evidence concerning the time and mode of wild horse (Equus ferus) domestication is still debated. High levels of genetic diversity in horse mtDNA have been detected when analyzing the control region; recurrent mutations, however, tend to blur the structure of the phylogenetic tree. Here, we brought the horse mtDNA phylogeny to the highest level of molecular resolution...

متن کامل

Reconstructing the origin and spread of horse domestication in the Eurasian steppe.

Despite decades of research across multiple disciplines, the early history of horse domestication remains poorly understood. On the basis of current evidence from archaeology, mitochondrial DNA, and Y-chromosomal sequencing, a number of different domestication scenarios have been proposed, ranging from the spread of domestic horses out of a restricted primary area of domestication to the domest...

متن کامل

Complete mitochondrial genomes of ancient canids suggest a European origin of domestic dogs.

The geographic and temporal origins of the domestic dog remain controversial, as genetic data suggest a domestication process in East Asia beginning 15,000 years ago, whereas the oldest doglike fossils are found in Europe and Siberia and date to >30,000 years ago. We analyzed the mitochondrial genomes of 18 prehistoric canids from Eurasia and the New World, along with a comprehensive panel of m...

متن کامل

Domestication of Persian Shallot (Allium hirtifolium) as Cultivated Crop

Due to highly consumption of extensive wild germplasm of Allium hirtifolium Boiss (Mooseer) in food and medicinal industry, exploration and domestication process have been done in Golestan province (Gorgan). Economic productions of domesticated Persian Shallot plants need to be improved through breeding process. The successes of domesticated accessions improvement program depend on the availabl...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:
  • Proceedings of the National Academy of Sciences of the United States of America

دوره 111 52  شماره 

صفحات  -

تاریخ انتشار 2014